Here is some information related to the computational aspect of my research.
Packages and code |
||
ThreadedGB | A Macaulay2 package for threaded computation of Groebner bases. Github links and code links coming soon! | |
RandomMonomialIdeals | A Macaulay2 package for computations with random algebraic objects: package overview and source code on GitHub. | |
Sampling graphs: restricted degeneracy | Supplementary Material (R and Python code) for the paper `DERGMs: Degeneracy-restricted exponential random graph models', developed by Denis Bajic, is located on GitHub. | |
Sampling graphs: shell sequences | Supplementary Material (R code) for the paper `Statistical models for cores decomposition of an undirected random graph' is located on GitHub. | |
Dynamic Markov bases | Supplementary Materials webpage for "Goodness-of-fit for log-linear network models: Dynamic Markov bases using hypergraphs". | |
GraphicalModels |
A Macaulay2 package for computations with graphical models.
GraphicalModels.m2 is fully documented and has earned a Macaulay2 certification star. Read about the package and its functionality here; or see the published version here (JSAG). |
|
PHCpack |
A Macaulay2 package that serves as an interface to PHCpack, a software for solving polynomial systems and performing calculations in
numerical algebraic geometry.
PHCpack.m2 is fully documented and has earned a Macaulay2 certification star. Read about the package and its functionality here; or see the published version here (JSAG). (The software PHCpack itself is available here). |
|
FourTiTwo | A Macaulay2 interface to 4ti2, with Mike Stillman and Josephine Yu. FourTiTwo.m2 is a fully documented package. (The software 4ti2 itself is available here.) |
|
Mixtures in Singular |
Supplementary Materials webpage for "Identifiability of Two Tree Mixtures for Group-Based Models"
|
|
Macaulay2 Workshops - Package development |
||
Macaulay2 website, google group, and wiki. | ||
IMA | A Macaulay2 workshop at the IMA, Minneapolis. July 2011. Co-organized with Anton Leykin. |
|
Colorado | A Macaulay2 workshop at Colorado College. August 2010. |
|
AIM | A Macaulay2 workshop. Oct 26-30 2009. See the wiki for information on the Algebraic Statistics group. |
|
Snowbird | Macaulay2 workshop. Oct 26-30 2009. See the wiki for progress reports. |